Okay, since nobody else has responded yet, I'll jump in. But beware, I'm a newbie myself, and just getting into my own top hat build, so buyer beware!
Nonetheless, IMHO while you could certainly have a side entry through the wall of a garbage can, it seems like a lot of work, with little benefit. First, getting a clean cut hole with a good seal around the inlet port seems difficult, especially if the can is corrugated or ribbed- the geometry defies my limited mind. However, if there's no vertical corrugation near the top, it would be easier to configure an opening. Most metal cans I've seen have one or more horizontal corrugations near the top (i.e., not a perfectly smooth cylinder), which might cause turbulence in the downward spiral flow of debris, and impair efficient collection.
Building the separator inside the can would reduce the volume available for waste, and would require more frequent emptying. With respect to emptying, unless the inlet tube is perfectly flush with the inside of the can, you might have trouble with having the baffle trapped below, so getting the baffle out to empty the can could be a real challenge!
With a top hat sitting on top of the can, you have more flexibility in design, and easier access to the components, so it would be easier to make tight seals, esp. at inlet and outlet ports. The only added seal is with the top lip of the can, which is pretty straightforward with a circular groove and maybe weatherstripping on the underside of the top hat. Finally, a separate top hat makes emptying a lot easier.
Whether a wok in the collector might help with fine dust collection (presumably what was missed by the Thien separator), I think it would have a slight benefit, if any. As far as I can tell, the principle of separation with a wok is essentially the same as with a Thien separator. I've never read anything suggesting that a wok is better, so fine dust that got past the Thien would also get past the wok. the only way it theoretically might help is if the width of the gap in the baffle is so large that more fine particles get by than normal (the narrower the baffle opening width, the better for small particles, but more clogging with chips and shavings; larger gap means less clogging, but more fine dust gets by). However, most wok designs I've seen have pretty big gaps, anyway, so I figure they'd have the same limitations as does the Thien design. So, if your collector already has a wok, I'd leave it it (probably can't hurt), but I wouldn't put one in as an addition to an external Thien separator; get a better filter canister instead!
Again, consider the above the opinions of a non-expert. Good luck :)
Nonetheless, IMHO while you could certainly have a side entry through the wall of a garbage can, it seems like a lot of work, with little benefit. First, getting a clean cut hole with a good seal around the inlet port seems difficult, especially if the can is corrugated or ribbed- the geometry defies my limited mind. However, if there's no vertical corrugation near the top, it would be easier to configure an opening. Most metal cans I've seen have one or more horizontal corrugations near the top (i.e., not a perfectly smooth cylinder), which might cause turbulence in the downward spiral flow of debris, and impair efficient collection.
Building the separator inside the can would reduce the volume available for waste, and would require more frequent emptying. With respect to emptying, unless the inlet tube is perfectly flush with the inside of the can, you might have trouble with having the baffle trapped below, so getting the baffle out to empty the can could be a real challenge!
With a top hat sitting on top of the can, you have more flexibility in design, and easier access to the components, so it would be easier to make tight seals, esp. at inlet and outlet ports. The only added seal is with the top lip of the can, which is pretty straightforward with a circular groove and maybe weatherstripping on the underside of the top hat. Finally, a separate top hat makes emptying a lot easier.
Whether a wok in the collector might help with fine dust collection (presumably what was missed by the Thien separator), I think it would have a slight benefit, if any. As far as I can tell, the principle of separation with a wok is essentially the same as with a Thien separator. I've never read anything suggesting that a wok is better, so fine dust that got past the Thien would also get past the wok. the only way it theoretically might help is if the width of the gap in the baffle is so large that more fine particles get by than normal (the narrower the baffle opening width, the better for small particles, but more clogging with chips and shavings; larger gap means less clogging, but more fine dust gets by). However, most wok designs I've seen have pretty big gaps, anyway, so I figure they'd have the same limitations as does the Thien design. So, if your collector already has a wok, I'd leave it it (probably can't hurt), but I wouldn't put one in as an addition to an external Thien separator; get a better filter canister instead!
Again, consider the above the opinions of a non-expert. Good luck :)